This Apple Butternut Squash Casserole brings together sweet, savory, and smoky in a heartwarming dish that screams autumn comfort. Tender roasted butternut squash and crisp apple slices are layered with smoky bacon, caramelized onions, a sprinkle of thyme, and topped with a buttery breadcrumb crust. Whether you’re preparing for a holiday feast or simply need a cozy side dish, this casserole delivers on flavor and texture.


The natural sweetness of the apples balances beautifully with the nutty depth of butternut squash, while the savory bacon and herbs keep every bite interesting. This dish is hearty enough to be the star of your plate, yet versatile enough to complement roasted meats, poultry, or vegetarian mains.
Why You’ll Love This Apple Butternut Squash Casserole
- Perfect balance of flavors: Sweet apples, savory bacon, and earthy squash are made for each other.
- Easy prep: Simple steps with rustic ingredients make this a breeze to pull together.
- Great for gatherings: Feeds a crowd and looks beautiful on the table.
- Versatile: Works as a holiday side or a comforting weeknight dinner.
What Kind of Apples Should I Use?
For the best results, use crisp, slightly tart apples like Honeycrisp, Pink Lady, or Braeburn. These hold their shape during baking and offer a nice contrast to the soft squash. Avoid overly soft varieties like Red Delicious, as they tend to become mushy in the oven.
Ingredients for the Apple Butternut Squash Casserole
Each ingredient in this dish plays a unique role in creating its comforting flavor and irresistible texture:
- Butternut Squash: The star of the casserole, it brings a creamy, slightly sweet base once roasted.
- Apples: Thinly sliced for tender sweetness and a pop of freshness.
- Bacon: Adds a savory crunch and smoky depth that elevates the whole dish.
- Onion: Sautéed until golden for a rich, slightly sweet background flavor.
- Fresh Thyme: Brings an herby brightness that ties everything together.
- Breadcrumbs: For a crunchy, golden topping that contrasts beautifully with the tender ingredients.
- Butter: Used for sautéing and in the breadcrumb topping to add richness.
- Salt & Pepper: Essential for seasoning and bringing out all the flavors.
How To Make the Apple Butternut Squash Casserole
Step 1: Prepare and Roast the Squash
Peel, seed, and cube the butternut squash. Toss with olive oil, salt, and pepper, then roast at 400°F until fork-tender and lightly caramelized, about 25-30 minutes.
Step 2: Cook the Bacon and Onions
In a skillet, cook chopped bacon until crisp. Remove and drain on paper towels. In the same pan, sauté diced onions in a bit of the bacon fat until they turn golden and soft.
Step 3: Assemble the Layers
In a greased baking dish, layer the roasted squash and sliced apples. Top with the cooked onions, bacon, and sprigs of fresh thyme.
Step 4: Add the Topping
Combine breadcrumbs with melted butter, a pinch of salt, and scatter over the top for that crispy finish.
Step 5: Bake to Golden Perfection
Bake uncovered at 375°F for 20-25 minutes until the top is golden brown and everything is bubbling and heated through.

How to Serve and Store Apple Butternut Squash Casserole
This casserole serves about 6 to 8 people as a side dish, making it perfect for family dinners, holiday tables, or fall potlucks. Serve it warm straight from the oven, ideally with a sprinkle of extra thyme on top for color and aroma.
To store, let the casserole cool completely before covering and refrigerating. It will keep well for up to 4 days. Reheat in the oven at 350°F for best texture, or use the microwave for a quicker option.
What to Serve With Apple Butternut Squash Casserole
Roasted Chicken
A simple herb-roasted chicken pairs beautifully with this casserole, creating a hearty and wholesome meal.
Glazed Ham
The sweetness of honey-glazed ham complements the apples and squash, making this duo holiday-worthy.
Quinoa Pilaf
For a vegetarian option, pair it with a nutty quinoa pilaf with cranberries or almonds.
Maple-Glazed Carrots
Keep the fall vibes going with tender, maple-glazed carrots that echo the sweetness in the casserole.
Green Salad with Balsamic Vinaigrette
A crisp salad helps balance the richness of the dish and adds a refreshing bite.
Frequently Asked Questions
Can I make this casserole ahead of time?
Yes! Assemble the casserole a day in advance (minus the breadcrumb topping), cover, and refrigerate. When ready to bake, add the topping and bake as directed.
Can I use frozen butternut squash?
You can, but fresh squash gives a better texture and flavor. If using frozen, thaw and pat dry before roasting to avoid excess moisture.
What can I substitute for bacon?
For a vegetarian version, try smoked tempeh or skip it altogether and add toasted walnuts or pecans for crunch.
How do I keep apples from getting mushy?
Choose firm apples like Honeycrisp or Pink Lady and slice them no thinner than ¼ inch. This helps them hold their shape during baking.
Can I freeze this casserole?
Yes, though the texture may change slightly upon reheating. Freeze the baked casserole (cooled completely), wrapped well. Reheat in the oven at 350°F until warmed through.
For more fall-friendly dishes, check out our Savory Sweet Potato Gratin or Cranberry Walnut Stuffed Acorn Squash recipes!
Apple Butternut Squash Casserole with Cozy Flavor
- Total Time: 70 minutes
- Yield: 8 servings
Description
Bring the warmth of fall to your table with this Apple Butternut Squash Casserole—a cozy, comforting side dish perfect for any gathering. With roasted squash, crisp apples, smoky bacon, and a golden breadcrumb topping, this dish blends sweet and savory flavors for a perfect autumn-inspired creation. Whether you’re hosting a holiday dinner or need an easy recipe for a weeknight meal, this dish delivers flavor, texture, and wholesome satisfaction. Ideal for fans of quick breakfasts, easy dinners, healthy snacks, or anyone searching for dinner ideas and comforting food recipes.
Ingredients
2 pounds butternut squash, peeled and cubed
2 apples, thinly sliced
6 slices bacon, chopped
1 large onion, diced
1 tablespoon fresh thyme leaves
1 cup breadcrumbs
3 tablespoons butter, melted
1 teaspoon salt
0.5 teaspoon black pepper
1 tablespoon olive oil
Instructions
1. Preheat the oven to 400°F and grease a baking dish.
2. Toss butternut squash with olive oil, salt, and pepper. Roast for 25-30 minutes until tender.
3. In a skillet, cook chopped bacon until crisp. Remove and set aside.
4. In the same skillet, sauté diced onions until golden and soft.
5. Layer roasted squash and apple slices in the prepared dish.
6. Top with cooked onions, bacon, and fresh thyme.
7. Combine breadcrumbs with melted butter and a pinch of salt, then sprinkle over the top.
8. Bake at 375°F for 20-25 minutes until golden brown and bubbling.
9. Serve hot with extra thyme for garnish.
Notes
For a vegetarian version, omit bacon and use toasted walnuts or pecans instead.
Make ahead by assembling (without topping) and refrigerating up to 1 day in advance.
- Prep Time: 20 minutes
- Cook Time: 50 minutes
- Category: Side Dish
- Method: Baked
- Cuisine: American
Nutrition
- Serving Size: 1 serving
- Calories: 280
- Sugar: 7g
- Sodium: 480mg
- Fat: 15g
- Saturated Fat: 6g
- Unsaturated Fat: 8g
- Trans Fat: 0g
- Carbohydrates: 29g
- Fiber: 4g
- Protein: 6g
- Cholesterol: 25mg
Keywords: easy recipe, fall recipe, casserole, dinner ideas, holiday side dish
